PathExplore Query Page
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Other Palenchar Group Tools

Last updated 03-21-2008

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Gene/Protein Queries with Statistics
1. Determine if two lists of genes or orthologs share a significant number of the same genes.     Explanation

2. Determine if two lists of genes contain a significant number of genes that encode for the same protein (i.e. orthologs or paralogs).     Explanation

Metabolic Pathway/Network Queries with Statistics
3. Compare two lists of genes, molecules, and/or proteins to see if the items fall into a significant numer of the same metabolic pathways.    Explanation

4. Finds pathways that are over-represented in a list of genes, molecules and/or proteins.    Explanation

5. Determine if two lists of molecules, proteins, and/or genes are significantly related based on the metabolic network.    Explanation

Pathway Queries without Statistics
1. Find all pathways from a list of genes, molecules, reactions, or proteins.    Explanation

Edit/Add to the PathExplore Contents
1. Add or edit genes, enzymes, transporters, and other proteins to the PathExplore Contents.     Explanation

2. Create your own set of metabolic pathways by changing the milestones and importance factors in PathExplore.     Explanation

Search the PathExplore Contents
1. Do a simple search of the PathExplore contents. This is a good way to determine if PathExplore contains a gene, protein, or molecule. It is also a good way to make sure your protein, gene, and molecules have the same naming, spelling, and punctuation used by PathExplore.

2. Do a detailed search of the PathExplore contents. This gives more information than the simple search. For example, if you have an enzyme of interest, this is a good way to obtain information about the reaction catalyzed by the enzyme and the genes that encode for the enzyme.    Explanation