Last updated 03-21-2008
Check for previous results with a results file ID
Gene/Protein Queries with Statistics
1.
Determine if two lists of genes or orthologs share a significant number of the same genes.
   
Explanation
2.
Determine if two lists of genes contain a significant number of genes that encode for the same protein
(i.e. orthologs or paralogs).
   
Explanation
Metabolic Pathway/Network Queries with Statistics
3. Compare
two lists of genes, molecules, and/or proteins to see if the items fall into a
significant numer of the same metabolic pathways.   
Explanation
4.
Finds pathways that are over-represented in a list of genes, molecules and/or
proteins.   
Explanation
5.
Determine if two lists of molecules, proteins, and/or genes are significantly related based on
the metabolic network.   
Explanation
Pathway Queries without Statistics
1. Find all pathways
from a list of genes, molecules, reactions, or proteins.   
Explanation
Edit/Add to the PathExplore Contents
1. Add or edit genes,
enzymes, transporters, and other proteins to the PathExplore Contents.
   
Explanation
2.
Create your own set of metabolic pathways by changing the milestones and importance factors in PathExplore.
   
Explanation
Search the PathExplore Contents
1. Do a simple search of the
PathExplore contents. This is a good way to determine if PathExplore contains a gene, protein, or
molecule. It is also a good way to make sure your protein, gene, and molecules have the same naming, spelling,
and punctuation used by PathExplore.
2. Do a detailed search of
the PathExplore contents. This gives more information than the simple search. For example, if you have
an enzyme of interest, this is a good way to obtain information about the reaction catalyzed by the enzyme and
the genes that encode for the enzyme.   
Explanation